Nextflow/CloudOps engineer

About the Position

We are seeking a skilled Nextflow/CloudOps engineer with expertise in CI/CD workflows, IaC frameworks, and microservice architecture for scientific data analysis.

Responsibilities

• Design, implement, and maintain Nextflow pipelines for execution, maintenance, and debugging.
• Build microservice-architecture solutions with a focus on scientific data analysis and management.
• Integrate AWS services (EC2/RDS/S3/Batch/KMS/ECS etc.) into production workflows.
• Create relational data models and ETL processing pipelines using PostgreSQL (preferred), Oracle, SQL Server, MySQL.
• Drive API (REST, GraphQL, etc.) driven, modular development of production workflows and integration with 3rd party vendor platforms.

Requirements

• SHOULD-HAVE (2+ years hands-on experience):
  • Proficient with at least one programming language (object-oriented programming): Python, Java (or C#).
  • Proficient with Nextflow pipelines, execution, maintenance, debugging.
  • Experience with building CI/CD workflows with Jenkins or equivalent.
  • Experience with using IaC frameworks (CloudFormation, Ansible, Terraform).
  • Experience with building microservice-architecture solutions with a focus on scientific data analysis and management.
  • Experience with integrating AWS services (EC2/RDS/S3/Batch/KMS/ECS etc.) into production workflows.
  • Experience with Epam-Cora deployment/support.
  • Experience with scripting languages: Python, Bash.
  • Experience with building production workflows using Java/Spring (preferred), Python, or C#/.Net.
  • Experience with Linux OS command line.
  • Experience with driving API (REST, GraphQL, etc.) driven, modular development of production workflows and integration with 3rd party vendor platforms.
  • Experience with creating relational data models, ETL processing pipelines using PostgreSQL (preferred), Oracle, SQL Server, MySQL.
• SOFT-SKILLS MUST:
  • Strong collaborator and communicator.
  • Strong problem-solving skills.
  • Experienced in making technical partnerships with research and business teams.

Nice to Have

• 1+ years of experience:
  • Building resource-intensive HPC analysis modules and/or data processing tasks.
  • Developing and deploying containerized applications (i.e., Docker, Singularity).
  • Working with containerization platform: Kubernetes/Helm.
  • Working with end-to-end testing framework: Robot/Selenium.
• Prior experience with:
  • Non-relational database vendors (Elastic Search, etc.).
  • Building, troubleshooting C, C++ libraries, and dependencies on Linux (maven, make, etc.).
  • Frontend development (any JS framework).

We Offer

• Opportunity to work remotely.
• Competitive compensation package.
• Professional growth and development opportunities.

About the Company

The Workly s.r.o. is a forward-thinking company based in Prague, Czechia, dedicated to innovation in the platform and infrastructure space.

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